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awesome-cancer-variant-resources
A GitHub list of every cancer variant database, maintained by the community.
Overview
awesome-cancer-variant-resources is a community-maintained GitHub list of cancer variant knowledge bases and databases, curated by Sean Davis with contributions from the community and published under an open licence. It is a useful index of variant resources that reaches well beyond the databases catalogued individually on OnCo, and it is the kind of list OnCo points a reader to when they need a variant database not covered here. On OnCo it is cited by the idea An open knowledge graph linking trials, results, biomarkers, drugs and recommendations.
Holds
Community-maintained list of cancer variant knowledge bases and databases.
Licence
Open
Maintainer
Sean Davis (community)
Connected
4Similar pages
- IdeaLabel every biomarker claim with an evidence phase, like drugs
- TermActionable genomic biomarkers
- IdeaEvery tumour sequencing report lists open, nearby, matched trials pulled live
- IdeaEvery tumour genomic report machine-readable and deposited nationally
- TechnologyCancer variant knowledgebases and molecular tumour boards
- TechnologyClinical NGS bioinformatics and variant interpretation
Open-source projects
All open source in oncology →Open-source projects that are the code behind this collection or publish it, from OnCo's own catalogue: licence and last activity as the repository reported them on the day of the fetch. Listing is not endorsement; check the licence before reuse and the validation before clinical use.
Sean Davis's curated list of cancer variant databases and resources.
Sources
Every source this page cites, grouped by who published it. Grouping is read from the web address, not assigned by hand.
github.com · 1
A source that has moved or gone is reported by the weekly link check. /audit/